To my eye, the superiority is obvious. The Kato wheels have a more rounded-over flange edge, and the flanges themselves slope out gently to the wheel tread. The Atlas flanges are more like a "pizza cutter blade", which would make them more susceptible to picking points and frogs.
Thanks for the photos.
Oh, this explains a lot. For a while (until I did a bunch of adjustments to my Fastracks jig built switches) I had an issue with my Atlas GP 7/9’s getting jammed up in said switches when every other brand of loco in my fleet (mostly Kato and Intermountain F units) slid through the switches without complaint. The solution was to adjust the point rails to give a smidge more space between the open point rail and the stock rail. The problem seems pretty clear in the close-up comparison image of the two brands of wheel sets. This was frustrating until I’d modified the offending switches, but I also agree that Atlas wheel sets are more prone to picking up ‘rail crud’ than Kato wheelsets.