The draft gear box being a little wider is of no consequence. It is in a position where it never gets viewed from the end. Only from the sides. So the side detail is of more importance. Also being a little wider has no effect any any other details added for example the pilot support pipes. As well, when you build all the underframe detail, the frame width is just a bit wider than prototype. That is because of the split frame design and how the shell sits on the frame. It is not that much wider though and allows some great frame detailing options such as traction motor cables
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The coupler pocket could use photo etched sides. It would reduce the width to being just 0.003" wider than prototype. Definitely not noticeable, but 0.014" is not all that detracting either. Using photo etch on the coupler pocket WOULD detract from how it looks because of the way coupler pockets are built and welded together. You need that overlap of the side pieces at the top. Just looks right. In 3D it looks really good and I am curious to see how it will look in model form.