That offset bolster is the problem... in order to put the centerline of the MT 1015 in line with the last side stake (which is where the bolster is on the proto), the model's bolster has to be moved... which precludes using a correct 100T truck on it.
I know what you are saying.... but moving the bolster on a fleet of coal hoppers in order to use a correct truck isn't realistic nor is it a good use of my time, especially when we don't have a "correct" (ie, scale) body mount coupler to go on it. So yes, the design of the Trainworx hopper is the "problem" (more so than the MTL truck).
Until such time that BLMA or anyone else makes a "correct" 4 bay (western) 100T coal hopper that enables the use of a "correct" 100T truck, the MTL offset bolster is not a problem, but a solution.
One can only hope that manufacturers start designing their future projects to enable the use of the BLMA trucks and body mount couplers.